J4_8ZFI_014
3D structure
- PDB id
- 8ZFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AACUG*CACAG*UGAC*GUAAU
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8ZFI_014 not in the Motif Atlas
- Homologous match to J4_8B0X_011
- Geometric discrepancy: 0.0992
- The information below is about J4_8B0X_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.6
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8ZFI|1|b|A|1772
8ZFI|1|b|A|1773
8ZFI|1|b|C|1774
8ZFI|1|b|U|1775
8ZFI|1|b|G|1776
*
8ZFI|1|b|C|1788
8ZFI|1|b|A|1789
8ZFI|1|b|C|1790
8ZFI|1|b|A|1791
8ZFI|1|b|G|1792
*
8ZFI|1|b|U|1827
8ZFI|1|b|G|1828
8ZFI|1|b|A|1829
8ZFI|1|b|C|1830
*
8ZFI|1|b|G|1975
8ZFI|1|b|U|1976
8ZFI|1|b|A|1977
8ZFI|1|b|A|1978
8ZFI|1|b|U|1979
Current chains
- Chain b
- RNA (2903-MER)
Nearby chains
- Chain c
- 50S ribosomal protein L2
Coloring options: