J4_8ZFI_014

3D structure

PDB id

8ZFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZFI|1|b|A|1772
8ZFI|1|b|A|1773
8ZFI|1|b|C|1774
8ZFI|1|b|U|1775
8ZFI|1|b|G|1776
*
8ZFI|1|b|C|1788
8ZFI|1|b|A|1789
8ZFI|1|b|C|1790
8ZFI|1|b|A|1791
8ZFI|1|b|G|1792
*
8ZFI|1|b|U|1827
8ZFI|1|b|G|1828
8ZFI|1|b|A|1829
8ZFI|1|b|C|1830
*
8ZFI|1|b|G|1975
8ZFI|1|b|U|1976
8ZFI|1|b|A|1977
8ZFI|1|b|A|1978
8ZFI|1|b|U|1979

Current chains

Chain b

RNA (2903-MER)

Nearby chains

Chain c

50S ribosomal protein L2