J4_8ZGR_001
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 8ZGR|1|LA|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8ZGR_001 not in the Motif Atlas
- Homologous match to J4_8CRE_001
- Geometric discrepancy: 0.1149
- The information below is about J4_8CRE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8ZGR|1|LA|U|112
8ZGR|1|LA|C|113
*
8ZGR|1|LA|G|267
8ZGR|1|LA|A|268
8ZGR|1|LA|G|269
8ZGR|1|LA|U|270
8ZGR|1|LA|C|271
8ZGR|1|LA|G|272
*
8ZGR|1|LA|C|293
8ZGR|1|LA|U|294
8ZGR|1|LA|A|295
8ZGR|1|LA|A|296
8ZGR|1|LA|G|297
8ZGR|1|LA|U|298
8ZGR|1|LA|G|299
*
8ZGR|1|LA|U|316
8ZGR|1|LA|A|317
8ZGR|1|LA|A|318
8ZGR|1|LA|A|319
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LN
- Large ribosomal subunit protein eL13A
- Chain LP
- Large ribosomal subunit protein eL15A
- Chain Lj
- Large ribosomal subunit protein uL29A
- Chain Lk
- Large ribosomal subunit protein eL36A
Coloring options: