J4_8ZGR_006
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8ZGR_006 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0668
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8ZGR|1|LA|G|2129
8ZGR|1|LA|A|2130
8ZGR|1|LA|C|2131
8ZGR|1|LA|U|2132
8ZGR|1|LA|G|2133
*
8ZGR|1|LA|C|2145
8ZGR|1|LA|A|2146
8ZGR|1|LA|U|2147
8ZGR|1|LA|A|2148
8ZGR|1|LA|G|2149
*
8ZGR|1|LA|U|2185
8ZGR|1|LA|G|2186
8ZGR|1|LA|A|2187
8ZGR|1|LA|U|2188
8ZGR|1|LA|U|2189
*
8ZGR|1|LA|A|2316
8ZGR|1|LA|U|2317
8ZGR|1|LA|U|2318
8ZGR|1|LA|A|2319
8ZGR|1|LA|A|2320
8ZGR|1|LA|C|2321
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL2A
- Chain Lp
- Large ribosomal subunit protein eL41A
- Chain Lr
- Large ribosomal subunit protein eL43A
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: