J4_8ZGR_012
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUGG*CGUCG*CCGAAGGUCG*CC
- Length
- 21 nucleotides
- Bulged bases
- 8ZGR|1|Ta|U|8, 8ZGR|1|Ta|G|9, 8ZGR|1|Ta|C|29, 8ZGR|1|Ta|C|42, 8ZGR|1|Ta|A|45, 8ZGR|1|Ta|G|46, 8ZGR|1|Ta|U|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZGR|1|Ta|G|7
8ZGR|1|Ta|U|8
8ZGR|1|Ta|G|9
8ZGR|1|Ta|G|10
*
8ZGR|1|Ta|C|26
8ZGR|1|Ta|G|27
8ZGR|1|Ta|U|28
8ZGR|1|Ta|C|29
8ZGR|1|Ta|G|30
*
8ZGR|1|Ta|C|41
8ZGR|1|Ta|C|42
8ZGR|1|Ta|G|43
8ZGR|1|Ta|A|44
8ZGR|1|Ta|A|45
8ZGR|1|Ta|G|46
8ZGR|1|Ta|G|47
8ZGR|1|Ta|U|48
8ZGR|1|Ta|C|49
8ZGR|1|Ta|G|50
*
8ZGR|1|Ta|C|66
8ZGR|1|Ta|C|67
Current chains
- Chain Ta
- tRNA (77-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SN
- Small ribosomal subunit protein eS31
- Chain Sc
- Small ribosomal subunit protein uS12A
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