J4_8ZGY_004
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8ZGY|1|LA|U|1522
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8ZGY_004 not in the Motif Atlas
- Homologous match to J4_8CRE_004
- Geometric discrepancy: 0.0565
- The information below is about J4_8CRE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8ZGY|1|LA|G|1491
8ZGY|1|LA|G|1492
8ZGY|1|LA|U|1493
8ZGY|1|LA|U|1494
8ZGY|1|LA|C|1495
*
8ZGY|1|LA|G|1519
8ZGY|1|LA|G|1520
8ZGY|1|LA|U|1521
8ZGY|1|LA|U|1522
8ZGY|1|LA|A|1523
8ZGY|1|LA|G|1524
*
8ZGY|1|LA|C|1613
8ZGY|1|LA|C|1614
*
8ZGY|1|LA|G|1828
8ZGY|1|LA|G|1829
8ZGY|1|LA|U|1830
8ZGY|1|LA|C|1831
8ZGY|1|LA|G|1832
8ZGY|1|LA|U|1833
8ZGY|1|LA|A|1834
8ZGY|1|LA|C|1835
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LT
- Large ribosomal subunit protein eL19A
- Chain LZ
- Large ribosomal subunit protein uL23
- Chain Li
- Large ribosomal subunit protein eL34A
- Chain Ll
- Large ribosomal subunit protein eL37A
- Chain Lm
- Large ribosomal subunit protein eL38
- Chain Ln
- Large ribosomal subunit protein eL39
Coloring options: