J4_8ZGY_005

3D structure

PDB id

8ZGY (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GG*CU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8ZGY_005 not in the Motif Atlas

Homologous match to J4_8P9A_016

Geometric discrepancy: 0.0921

The information below is about J4_8P9A_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8ZGY|1|LA|G|1673
8ZGY|1|LA|G|1674
*
8ZGY|1|LA|C|1692
8ZGY|1|LA|U|1693
*
8ZGY|1|LA|A|1751
8ZGY|1|LA|G|1752
*
8ZGY|1|LA|U|1771
8ZGY|1|LA|C|1772

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LW

Large ribosomal subunit protein eL22A

Chain Li

Large ribosomal subunit protein eL34A

Chain Lm

Large ribosomal subunit protein eL38