J4_8ZGY_012
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 8ZGY|1|Tb|U|48, 8ZGY|1|Tb|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8ZGY_012 not in the Motif Atlas
- Homologous match to J4_6UGG_002
- Geometric discrepancy: 0.3672
- The information below is about J4_6UGG_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8ZGY|1|Tb|G|7
8ZGY|1|Tb|U|8
8ZGY|1|Tb|G|9
8ZGY|1|Tb|G|10
*
8ZGY|1|Tb|C|26
8ZGY|1|Tb|G|27
8ZGY|1|Tb|U|28
*
8ZGY|1|Tb|A|44
8ZGY|1|Tb|A|45
8ZGY|1|Tb|G|46
8ZGY|1|Tb|G|47
8ZGY|1|Tb|U|48
8ZGY|1|Tb|C|49
8ZGY|1|Tb|G|50
*
8ZGY|1|Tb|C|66
8ZGY|1|Tb|C|67
Current chains
- Chain Tb
- tRNA (77-MER)
Nearby chains
- Chain LA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lq
- Large ribosomal subunit protein eL42A
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SK
- Small ribosomal subunit protein eS25A
Coloring options: