J4_8ZHC_007

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUG*CGG*UCUUAAGGUAG*UGAAUG

Length

23 nucleotides

Bulged bases

8ZHC|1|LA|U|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZHC|1|LA|C|2191
8ZHC|1|LA|U|2192
8ZHC|1|LA|G|2193
*
8ZHC|1|LA|C|2247
8ZHC|1|LA|G|2248
8ZHC|1|LA|G|2249
*
8ZHC|1|LA|U|2265
8ZHC|1|LA|C|2266
8ZHC|1|LA|U|2267
8ZHC|1|LA|U|2268
8ZHC|1|LA|A|2269
8ZHC|1|LA|A|2270
8ZHC|1|LA|G|2271
8ZHC|1|LA|G|2272
8ZHC|1|LA|U|2273
8ZHC|1|LA|A|2274
8ZHC|1|LA|G|2275
*
8ZHC|1|LA|U|2309
8ZHC|1|LA|G|2310
8ZHC|1|LA|A|2311
8ZHC|1|LA|A|2312
8ZHC|1|LA|U|2313
8ZHC|1|LA|G|2314

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LD

Large ribosomal subunit protein uL2A

Chain Lp

Large ribosomal subunit protein eL41A

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain Ta

Transfer RNA; tRNA