J4_8ZTU_001

3D structure

PDB id

8ZTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome arrested by PepNL

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8ZTU|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8ZTU_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1803

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8ZTU|1|A|G|115
8ZTU|1|A|A|116
8ZTU|1|A|G|117
8ZTU|1|A|U|118
8ZTU|1|A|A|119
8ZTU|1|A|A|120
8ZTU|1|A|U|121
8ZTU|1|A|G|122
*
8ZTU|1|A|U|239
8ZTU|1|A|G|240
*
8ZTU|1|A|C|286
8ZTU|1|A|U|287
8ZTU|1|A|A|288
8ZTU|1|A|G|289
*
8ZTU|1|A|C|311
8ZTU|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17