J4_8ZTU_005

3D structure

PDB id

8ZTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome arrested by PepNL

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8ZTU|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8ZTU_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1452

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8ZTU|1|a|C|268
8ZTU|1|a|C|269
*
8ZTU|1|a|G|370
8ZTU|1|a|A|371
8ZTU|1|a|G|372
8ZTU|1|a|U|373
8ZTU|1|a|A|374
8ZTU|1|a|G|375
*
8ZTU|1|a|U|399
8ZTU|1|a|G|400
8ZTU|1|a|A|401
8ZTU|1|a|A|402
8ZTU|1|a|U|403
8ZTU|1|a|A|404
8ZTU|1|a|U|405
8ZTU|1|a|G|406
*
8ZTU|1|a|C|421
8ZTU|1|a|A|422
8ZTU|1|a|A|423
8ZTU|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28