J4_8ZTV_005

3D structure

PDB id

8ZTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome arrested by PepNL with RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8ZTV|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8ZTV_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1417

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8ZTV|1|a|C|268
8ZTV|1|a|C|269
*
8ZTV|1|a|G|370
8ZTV|1|a|A|371
8ZTV|1|a|G|372
8ZTV|1|a|U|373
8ZTV|1|a|A|374
8ZTV|1|a|G|375
*
8ZTV|1|a|U|399
8ZTV|1|a|G|400
8ZTV|1|a|A|401
8ZTV|1|a|A|402
8ZTV|1|a|U|403
8ZTV|1|a|A|404
8ZTV|1|a|U|405
8ZTV|1|a|G|406
*
8ZTV|1|a|C|421
8ZTV|1|a|A|422
8ZTV|1|a|A|423
8ZTV|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28