J4_8ZTV_010

3D structure

PDB id

8ZTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome arrested by PepNL with RF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

8ZTV|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8ZTV_010 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0817

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8ZTV|1|a|U|1313
8ZTV|1|a|C|1314
*
8ZTV|1|a|G|1338
8ZTV|1|a|G|1339
8ZTV|1|a|U|1340
8ZTV|1|a|G|1341
8ZTV|1|a|A|1342
8ZTV|1|a|G|1343
*
8ZTV|1|a|C|1404
8ZTV|1|a|U|1405
*
8ZTV|1|a|A|1597
8ZTV|1|a|A|1598
8ZTV|1|a|U|1599
8ZTV|1|a|C|1600
8ZTV|1|a|G|1601
8ZTV|1|a|U|1602
8ZTV|1|a|A|1603

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

50S ribosomal protein L23