J4_9A9V_001

3D structure

PDB id

9A9V (explore in PDB, NAKB, or RNA 3D Hub)

Description

All-atom model of the Rev Response RNA Element of HIV-1 generated by mutagenesis- and FRET-guided FARFAR2 model selection.

Experimental method

HYBRID

Resolution

Loop

Sequence

CAGGAAG*CAAC*GA*UGG

Length

16 nucleotides

Bulged bases

9A9V|1|A|A|106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9A9V|1|A|C|33
9A9V|1|A|A|34
9A9V|1|A|G|35
9A9V|1|A|G|36
9A9V|1|A|A|37
9A9V|1|A|A|38
9A9V|1|A|G|39
*
9A9V|1|A|C|104
9A9V|1|A|A|105
9A9V|1|A|A|106
9A9V|1|A|C|107
*
9A9V|1|A|G|124
9A9V|1|A|A|125
*
9A9V|1|A|U|198
9A9V|1|A|G|199
9A9V|1|A|G|200

Current chains

Chain A

RNA (234-MER)

Nearby chains