J4_9AX7_005

3D structure

PDB id

9AX7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9AX7|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9AX7_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.152

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9AX7|1|a|C|268
9AX7|1|a|C|269
*
9AX7|1|a|G|370
9AX7|1|a|A|371
9AX7|1|a|G|372
9AX7|1|a|U|373
9AX7|1|a|A|374
9AX7|1|a|G|375
*
9AX7|1|a|U|399
9AX7|1|a|G|400
9AX7|1|a|A|401
9AX7|1|a|A|402
9AX7|1|a|U|403
9AX7|1|a|A|404
9AX7|1|a|U|405
9AX7|1|a|G|406
*
9AX7|1|a|C|421
9AX7|1|a|A|422
9AX7|1|a|A|423
9AX7|1|a|G|424

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28