J4_9AX8_001

3D structure

PDB id

9AX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9AX8|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9AX8_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1263

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9AX8|1|A|C|268
9AX8|1|A|C|269
*
9AX8|1|A|G|370
9AX8|1|A|A|371
9AX8|1|A|G|372
9AX8|1|A|U|373
9AX8|1|A|A|374
9AX8|1|A|G|375
*
9AX8|1|A|U|399
9AX8|1|A|G|400
9AX8|1|A|A|401
9AX8|1|A|A|402
9AX8|1|A|U|403
9AX8|1|A|A|404
9AX8|1|A|U|405
9AX8|1|A|G|406
*
9AX8|1|A|C|421
9AX8|1|A|A|422
9AX8|1|A|A|423
9AX8|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L28