J4_9AX8_011

3D structure

PDB id

9AX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9AX8_011 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.0779

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9AX8|1|A|G|2643
9AX8|1|A|G|2644
9AX8|1|A|G|2645
9AX8|1|A|C|2646
*
9AX8|1|A|G|2674
9AX8|1|A|A|2675
9AX8|1|A|C|2676
*
9AX8|1|A|G|2731
9AX8|1|A|G|2732
9AX8|1|A|A|2733
9AX8|1|A|A|2734
9AX8|1|A|G|2735
*
9AX8|1|A|U|2769
9AX8|1|A|G|2770
9AX8|1|A|C|2771

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain K

50S ribosomal protein L14