J4_9AXU_001

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

UC*GAGUCG*CUAAAUG*UAAA

Length

19 nucleotides

Bulged bases

9AXU|1|2|U|306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

9AXU|1|2|U|112
9AXU|1|2|C|113
*
9AXU|1|2|G|275
9AXU|1|2|A|276
9AXU|1|2|G|277
9AXU|1|2|U|278
9AXU|1|2|C|279
9AXU|1|2|G|280
*
9AXU|1|2|C|301
9AXU|1|2|U|302
9AXU|1|2|A|303
9AXU|1|2|A|304
9AXU|1|2|A|305
9AXU|1|2|U|306
9AXU|1|2|G|307
*
9AXU|1|2|U|324
9AXU|1|2|A|325
9AXU|1|2|A|326
9AXU|1|2|A|327

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain X

Large ribosomal subunit protein eL13

Chain Z

Large ribosomal subunit protein eL15B

Chain t

Large ribosomal subunit protein uL29

Chain u

Large ribosomal subunit protein eL36B