J4_9AXU_002

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

CGGUCUAAG*CGUC*GAG*CGUCUUUG

Length

24 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AXU|1|2|C|188
9AXU|1|2|G|189
9AXU|1|2|G|190
9AXU|1|2|U|191
9AXU|1|2|C|192
9AXU|1|2|U|193
9AXU|1|2|A|194
9AXU|1|2|A|195
9AXU|1|2|G|196
*
9AXU|1|2|C|212
9AXU|1|2|G|213
9AXU|1|2|U|214
9AXU|1|2|C|215
*
9AXU|1|2|G|219
9AXU|1|2|A|220
9AXU|1|2|G|221
*
9AXU|1|2|C|233
9AXU|1|2|G|234
9AXU|1|2|U|235
9AXU|1|2|C|236
9AXU|1|2|U|237
9AXU|1|2|U|238
9AXU|1|2|U|239
9AXU|1|2|G|240

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain P

Large ribosomal subunit protein uL4A

Chain k

Large ribosomal subunit protein uL24

Chain v

Large ribosomal subunit protein eL37B