J4_9AXU_008
3D structure
- PDB id
- 9AXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Non-translating S. pombe ribosome large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.94 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9AXU|1|2|U|2402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9AXU_008 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.4634
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
9AXU|1|2|C|2280
9AXU|1|2|U|2281
9AXU|1|2|G|2282
*
9AXU|1|2|C|2336
9AXU|1|2|G|2337
*
9AXU|1|2|C|2355
9AXU|1|2|U|2356
9AXU|1|2|U|2357
9AXU|1|2|A|2358
9AXU|1|2|A|2359
9AXU|1|2|G|2360
9AXU|1|2|G|2361
9AXU|1|2|U|2362
9AXU|1|2|A|2363
9AXU|1|2|G|2364
*
9AXU|1|2|U|2398
9AXU|1|2|G|2399
9AXU|1|2|A|2400
9AXU|1|2|A|2401
9AXU|1|2|U|2402
9AXU|1|2|G|2403
Current chains
- Chain 2
- 28S ribosomal RNA
Nearby chains
- Chain N
- Large ribosomal subunit protein uL2C
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