J4_9AXU_010

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

UAA*UC*GCC*GUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_37757.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9AXU|1|2|U|3106
9AXU|1|2|A|3107
9AXU|1|2|A|3108
*
9AXU|1|2|U|3138
9AXU|1|2|C|3139
*
9AXU|1|2|G|3194
9AXU|1|2|C|3195
9AXU|1|2|C|3196
*
9AXU|1|2|G|3230
9AXU|1|2|U|3231
9AXU|1|2|G|3232

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain O

Large ribosomal subunit protein uL3A

Chain a

Large ribosomal subunit protein uL13A

Chain h

Large ribosomal subunit protein uL14B