J4_9AZC_003

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

9AZC|1|L5|C|216, 9AZC|1|L5|C|217, 9AZC|1|L5|A|218, 9AZC|1|L5|G|219

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AZC|1|L5|C|196
9AZC|1|L5|A|197
9AZC|1|L5|A|198
9AZC|1|L5|G|199
*
9AZC|1|L5|C|215
9AZC|1|L5|C|216
9AZC|1|L5|C|217
9AZC|1|L5|A|218
9AZC|1|L5|G|219
9AZC|1|L5|C|220
9AZC|1|L5|C|221
9AZC|1|L5|C|222
*
9AZC|1|L5|G|226
9AZC|1|L5|A|227
9AZC|1|L5|C|228
*
9AZC|1|L5|G|240
9AZC|1|L5|G|241
9AZC|1|L5|U|242
9AZC|1|L5|A|243
9AZC|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26