J4_9AZC_004

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CUC*GCC*GCGC*GGAGCG

Length

16 nucleotides

Bulged bases

9AZC|1|L5|G|1271, 9AZC|1|L5|C|1272

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AZC|1|L5|C|981
9AZC|1|L5|U|982
9AZC|1|L5|C|983
*
9AZC|1|L5|G|1070
9AZC|1|L5|C|1071
9AZC|1|L5|C|1072
*
9AZC|1|L5|G|1240
9AZC|1|L5|C|1241
9AZC|1|L5|G|1242
9AZC|1|L5|C|1243
*
9AZC|1|L5|G|1268
9AZC|1|L5|G|1269
9AZC|1|L5|A|1270
9AZC|1|L5|G|1271
9AZC|1|L5|C|1272
9AZC|1|L5|G|1273

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Lb

60S ribosomal protein L29