J4_9AZC_005

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

9AZC|1|L5|A|2366, 9AZC|1|L5|U|2369, 9AZC|1|L5|U|2828

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AZC|1|L5|C|2365
9AZC|1|L5|A|2366
9AZC|1|L5|A|2367
9AZC|1|L5|A|2368
9AZC|1|L5|U|2369
9AZC|1|L5|A|2370
9AZC|1|L5|U|2371
*
9AZC|1|L5|A|2389
9AZC|1|L5|G|2390
9AZC|1|L5|G|2391
*
9AZC|1|L5|C|2824
9AZC|1|L5|A|2825
9AZC|1|L5|U|2826
9AZC|1|L5|G|2827
9AZC|1|L5|U|2828
9AZC|1|L5|U|2829
*
9AZC|1|L5|A|3856
9AZC|1|L5|G|3857

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CI

NAC-beta

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31