J4_9AZC_009

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CUG*CGG*UCUUAAGGUAG*UGAAUG

Length

23 nucleotides

Bulged bases

9AZC|1|L5|U|3772, 9AZC|1|L5|U|3818

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AZC|1|L5|C|3696
9AZC|1|L5|U|3697
9AZC|1|L5|G|3698
*
9AZC|1|L5|C|3752
9AZC|1|L5|G|3753
9AZC|1|L5|G|3754
*
9AZC|1|L5|U|3770
9AZC|1|L5|C|3771
9AZC|1|L5|U|3772
9AZC|1|L5|U|3773
9AZC|1|L5|A|3774
9AZC|1|L5|A|3775
9AZC|1|L5|G|3776
9AZC|1|L5|G|3777
9AZC|1|L5|U|3778
9AZC|1|L5|A|3779
9AZC|1|L5|G|3780
*
9AZC|1|L5|U|3814
9AZC|1|L5|G|3815
9AZC|1|L5|A|3816
9AZC|1|L5|A|3817
9AZC|1|L5|U|3818
9AZC|1|L5|G|3819

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain Pt

Transfer RNA; tRNA

Chain S2

Small subunit ribosomal RNA; SSU rRNA