J4_9B0N_011
3D structure
- PDB id
- 9B0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human Post-eEF1A-AT-P state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.92 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 9B0N|1|L5|A|4234
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9B0N_011 not in the Motif Atlas
- Homologous match to J4_8CRE_008
- Geometric discrepancy: 0.1761
- The information below is about J4_8CRE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9B0N|1|L5|C|4231
9B0N|1|L5|U|4232
9B0N|1|L5|A|4233
9B0N|1|L5|A|4234
9B0N|1|L5|G|4235
*
9B0N|1|L5|U|4289
9B0N|1|L5|U|4290
9B0N|1|L5|G|4291
9B0N|1|L5|A|4292
9B0N|1|L5|U|4293
*
9B0N|1|L5|A|4317
9B0N|1|L5|C|4318
9B0N|1|L5|C|4319
*
9B0N|1|L5|G|4328
9B0N|1|L5|G|4329
9B0N|1|L5|G|4330
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL18
- Chain LT
- 60S ribosomal protein L21
- Chain Lb
- 60S ribosomal protein L29
- Chain Lo
- 60S ribosomal protein L36a
Coloring options: