J4_9B0Q_020

3D structure

PDB id

9B0Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-back di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

9B0Q|1|l5|A|2366, 9B0Q|1|l5|U|2369, 9B0Q|1|l5|A|2370, 9B0Q|1|l5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0Q|1|l5|C|2365
9B0Q|1|l5|A|2366
9B0Q|1|l5|A|2367
9B0Q|1|l5|A|2368
9B0Q|1|l5|U|2369
9B0Q|1|l5|A|2370
9B0Q|1|l5|U|2371
*
9B0Q|1|l5|A|2389
9B0Q|1|l5|G|2390
9B0Q|1|l5|G|2391
*
9B0Q|1|l5|C|2824
9B0Q|1|l5|A|2825
9B0Q|1|l5|U|2826
9B0Q|1|l5|G|2827
9B0Q|1|l5|U|2828
9B0Q|1|l5|U|2829
*
9B0Q|1|l5|A|3856
9B0Q|1|l5|G|3857

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain lP

60S ribosomal protein L17

Chain lR

60S ribosomal protein L19

Chain ld

60S ribosomal protein L31