J4_9B0S_005

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUC*GCC*GCGC*GGAGCG

Length

16 nucleotides

Bulged bases

9B0S|1|L5|G|1271, 9B0S|1|L5|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0S|1|L5|C|981
9B0S|1|L5|U|982
9B0S|1|L5|C|983
*
9B0S|1|L5|G|1070
9B0S|1|L5|C|1071
9B0S|1|L5|C|1072
*
9B0S|1|L5|G|1240
9B0S|1|L5|C|1241
9B0S|1|L5|G|1242
9B0S|1|L5|C|1243
*
9B0S|1|L5|G|1268
9B0S|1|L5|G|1269
9B0S|1|L5|A|1270
9B0S|1|L5|G|1271
9B0S|1|L5|C|1272
9B0S|1|L5|G|1273

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LF

60S ribosomal protein L7

Chain Lb

Large ribosomal subunit protein eL29