J4_9B0S_022
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 9B0S|1|l5|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9B0S_022 not in the Motif Atlas
- Homologous match to J4_8CRE_004
- Geometric discrepancy: 0.0762
- The information below is about J4_8CRE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9B0S|1|l5|G|2406
9B0S|1|l5|G|2407
9B0S|1|l5|U|2408
9B0S|1|l5|U|2409
9B0S|1|l5|C|2410
*
9B0S|1|l5|G|2434
9B0S|1|l5|G|2435
9B0S|1|l5|U|2436
9B0S|1|l5|C|2437
9B0S|1|l5|A|2438
9B0S|1|l5|G|2439
*
9B0S|1|l5|U|2538
9B0S|1|l5|C|2539
*
9B0S|1|l5|G|2777
9B0S|1|l5|G|2778
9B0S|1|l5|C|2779
9B0S|1|l5|C|2780
9B0S|1|l5|G|2781
9B0S|1|l5|U|2782
9B0S|1|l5|A|2783
9B0S|1|l5|C|2784
Current chains
- Chain l5
- 28S rRNA [Homo sapiens]
Nearby chains
- Chain l8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain lR
- 60S ribosomal protein L19
- Chain lX
- 60S ribosomal protein L23a
- Chain lg
- 60S ribosomal protein L34
- Chain lh
- 60S ribosomal protein L35
- Chain lj
- 60S ribosomal protein L37
- Chain lk
- 60S ribosomal protein L38
- Chain ll
- 60S ribosomal protein L39
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