3D structure

PDB id
9B0S (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human top-top di-ribosome structure (Composite map)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GGUUC*GGUCAG*UC*GGCCGUAC
Length
21 nucleotides
Bulged bases
9B0S|1|l5|C|2437
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9B0S_022 not in the Motif Atlas
Homologous match to J4_8CRE_004
Geometric discrepancy: 0.0762
The information below is about J4_8CRE_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

9B0S|1|l5|G|2406
9B0S|1|l5|G|2407
9B0S|1|l5|U|2408
9B0S|1|l5|U|2409
9B0S|1|l5|C|2410
*
9B0S|1|l5|G|2434
9B0S|1|l5|G|2435
9B0S|1|l5|U|2436
9B0S|1|l5|C|2437
9B0S|1|l5|A|2438
9B0S|1|l5|G|2439
*
9B0S|1|l5|U|2538
9B0S|1|l5|C|2539
*
9B0S|1|l5|G|2777
9B0S|1|l5|G|2778
9B0S|1|l5|C|2779
9B0S|1|l5|C|2780
9B0S|1|l5|G|2781
9B0S|1|l5|U|2782
9B0S|1|l5|A|2783
9B0S|1|l5|C|2784

Current chains

Chain l5
28S rRNA [Homo sapiens]

Nearby chains

Chain l8
5.8S ribosomal RNA; 5.8S rRNA
Chain lR
60S ribosomal protein L19
Chain lX
60S ribosomal protein L23a
Chain lg
60S ribosomal protein L34
Chain lh
60S ribosomal protein L35
Chain lj
60S ribosomal protein L37
Chain lk
60S ribosomal protein L38
Chain ll
60S ribosomal protein L39

Coloring options:


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