3D structure

PDB id
9B0S (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human top-top di-ribosome structure (Composite map)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GACUG*CAAAG*UGAUU*AUGAAC
Length
21 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9B0S_024 not in the Motif Atlas
Homologous match to J4_8P9A_017
Geometric discrepancy: 0.09
The information below is about J4_8P9A_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_78485.1
Basepair signature
cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
Number of instances in this motif group
6

Unit IDs

9B0S|1|l5|G|3634
9B0S|1|l5|A|3635
9B0S|1|l5|C|3636
9B0S|1|l5|U|3637
9B0S|1|l5|G|3638
*
9B0S|1|l5|C|3650
9B0S|1|l5|A|3651
9B0S|1|l5|A|3652
9B0S|1|l5|A|3653
9B0S|1|l5|G|3654
*
9B0S|1|l5|U|3690
9B0S|1|l5|G|3691
9B0S|1|l5|A|3692
9B0S|1|l5|U|3693
9B0S|1|l5|U|3694
*
9B0S|1|l5|A|3821
9B0S|1|l5|U|3822
9B0S|1|l5|G|3823
9B0S|1|l5|A|3824
9B0S|1|l5|A|3825
9B0S|1|l5|C|3826

Current chains

Chain l5
28S rRNA [Homo sapiens]

Nearby chains

Chain lA
60S ribosomal protein L8
Chain ln
60S ribosomal protein L41
Chain lp
60S ribosomal protein L37a
Chain s2
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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