J4_9B0S_032
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AUCUUGGGAGCGGGCGUCCCCGCCC*GCGUU*AUGGAAUAGG*CAUGAU
- Length
- 46 nucleotides
- Bulged bases
- 9B0S|1|s2|C|687, 9B0S|1|s2|U|688, 9B0S|1|s2|G|697, 9B0S|1|s2|C|730, 9B0S|1|s2|U|732, 9B0S|1|s2|C|735, 9B0S|1|s2|G|798, 9B0S|1|s2|U|871, 9B0S|1|s2|G|873, 9B0S|1|s2|A|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9B0S|1|s2|A|685
9B0S|1|s2|U|686
9B0S|1|s2|C|687
9B0S|1|s2|U|688
9B0S|1|s2|U|689
9B0S|1|s2|G|690
9B0S|1|s2|G|691
9B0S|1|s2|G|692
9B0S|1|s2|A|693
9B0S|1|s2|G|694
9B0S|1|s2|C|695
9B0S|1|s2|G|696
9B0S|1|s2|G|697
9B0S|1|s2|G|698
9B0S|1|s2|C|730
9B0S|1|s2|G|731
9B0S|1|s2|U|732
9B0S|1|s2|C|733
9B0S|1|s2|C|734
9B0S|1|s2|C|735
9B0S|1|s2|C|736
9B0S|1|s2|G|737
9B0S|1|s2|C|738
9B0S|1|s2|C|739
9B0S|1|s2|C|746
*
9B0S|1|s2|G|796
9B0S|1|s2|C|797
9B0S|1|s2|G|798
9B0S|1|s2|U|799
9B0S|1|s2|U|800
*
9B0S|1|s2|A|865
9B0S|1|s2|U|866
9B0S|1|s2|G|867
9B0S|1|s2|G|868
9B0S|1|s2|A|869
9B0S|1|s2|A|870
9B0S|1|s2|U|871
9B0S|1|s2|A|872
9B0S|1|s2|G|873
9B0S|1|s2|G|874
*
9B0S|1|s2|C|912
9B0S|1|s2|A|913
9B0S|1|s2|U|914
9B0S|1|s2|G|915
9B0S|1|s2|A|916
9B0S|1|s2|U|917
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain lR
- 60S ribosomal protein L19
- Chain sE
- Small ribosomal subunit protein eS4, X isoform
- Chain sH
- Small ribosomal subunit protein eS7
- Chain sL
- 40S ribosomal protein S11
- Chain sN
- 40S ribosomal protein S13
- Chain sW
- 40S ribosomal protein S15a
- Chain sX
- 40S ribosomal protein S23
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