J4_9B11_009

3D structure

PDB id

9B11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating without CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CUG*CGG*UCUUAAGGUAG*UGAAUG

Length

23 nucleotides

Bulged bases

9B11|1|L5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B11|1|L5|C|3696
9B11|1|L5|U|3697
9B11|1|L5|G|3698
*
9B11|1|L5|C|3752
9B11|1|L5|G|3753
9B11|1|L5|G|3754
*
9B11|1|L5|U|3770
9B11|1|L5|C|3771
9B11|1|L5|U|3772
9B11|1|L5|U|3773
9B11|1|L5|A|3774
9B11|1|L5|A|3775
9B11|1|L5|G|3776
9B11|1|L5|G|3777
9B11|1|L5|U|3778
9B11|1|L5|A|3779
9B11|1|L5|G|3780
*
9B11|1|L5|U|3814
9B11|1|L5|G|3815
9B11|1|L5|A|3816
9B11|1|L5|A|3817
9B11|1|L5|U|3818
9B11|1|L5|G|3819

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA