3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
AUCUUGGGAGCGGGCGUCCCCGCCCU*AGCGUU*AUGGAAUAGG*CAUGAU
Length
48 nucleotides
Bulged bases
9B11|1|S2|C|687, 9B11|1|S2|U|688, 9B11|1|S2|G|696, 9B11|1|S2|G|697, 9B11|1|S2|C|730, 9B11|1|S2|U|732, 9B11|1|S2|C|733, 9B11|1|S2|C|734, 9B11|1|S2|C|735, 9B11|1|S2|C|736, 9B11|1|S2|C|738, 9B11|1|S2|C|739, 9B11|1|S2|U|871, 9B11|1|S2|G|873, 9B11|1|S2|A|913
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9B11|1|S2|A|685
9B11|1|S2|U|686
9B11|1|S2|C|687
9B11|1|S2|U|688
9B11|1|S2|U|689
9B11|1|S2|G|690
9B11|1|S2|G|691
9B11|1|S2|G|692
9B11|1|S2|A|693
9B11|1|S2|G|694
9B11|1|S2|C|695
9B11|1|S2|G|696
9B11|1|S2|G|697
9B11|1|S2|G|698
9B11|1|S2|C|730
9B11|1|S2|G|731
9B11|1|S2|U|732
9B11|1|S2|C|733
9B11|1|S2|C|734
9B11|1|S2|C|735
9B11|1|S2|C|736
9B11|1|S2|G|737
9B11|1|S2|C|738
9B11|1|S2|C|739
9B11|1|S2|C|746
9B11|1|S2|U|747
*
9B11|1|S2|A|795
9B11|1|S2|G|796
9B11|1|S2|C|797
9B11|1|S2|G|798
9B11|1|S2|U|799
9B11|1|S2|U|800
*
9B11|1|S2|A|865
9B11|1|S2|U|866
9B11|1|S2|G|867
9B11|1|S2|G|868
9B11|1|S2|A|869
9B11|1|S2|A|870
9B11|1|S2|U|871
9B11|1|S2|A|872
9B11|1|S2|G|873
9B11|1|S2|G|874
*
9B11|1|S2|C|912
9B11|1|S2|A|913
9B11|1|S2|U|914
9B11|1|S2|G|915
9B11|1|S2|A|916
9B11|1|S2|U|917

Current chains

Chain S2
18S rRNA

Nearby chains

Chain LR
60S ribosomal protein L19
Chain SE
Small ribosomal subunit protein eS4, X isoform
Chain SH
40S ribosomal protein S7
Chain SL
40S ribosomal protein S11
Chain SN
40S ribosomal protein S13
Chain SW
40S ribosomal protein S15a
Chain SX
40S ribosomal protein S23

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.2408 s