J4_9B24_001

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GAGUAACAC*GGC*GUAG*CC

Length

18 nucleotides

Bulged bases

9B24|1|A|C|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B24|1|A|G|111
9B24|1|A|A|112
9B24|1|A|G|113
9B24|1|A|U|114
9B24|1|A|A|115
9B24|1|A|A|116
9B24|1|A|C|117
9B24|1|A|A|118
9B24|1|A|C|119
*
9B24|1|A|G|238
9B24|1|A|G|239
9B24|1|A|C|240
*
9B24|1|A|G|286
9B24|1|A|U|287
9B24|1|A|A|288
9B24|1|A|G|289
*
9B24|1|A|C|311
9B24|1|A|C|312

Current chains

Chain A

RNA (1528-MER)

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain Q

Small ribosomal subunit protein uS17