J4_9B24_004

3D structure

PDB id

9B24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT strain gidB mutant mycobacterial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GCUAAACCGUAUGCAUGUGAUACCGGGUAGGGGUUGUGUGUGCGGGGUUGUGGGACCUAUCUUU*AGGGCAGUGAGAAAAUGUUG*CGACGUCUGUCUUGAUGGUGUUCCCGAGUAG*UGAAUCUGCCGGGACCACCCGGUAAGCC

Length

143 nucleotides

Bulged bases

9B24|1|Y|U|285, 9B24|1|Y|C|291, 9B24|1|Y|G|292, 9B24|1|Y|G|300, 9B24|1|Y|U|301, 9B24|1|Y|U|302, 9B24|1|Y|U|318, 9B24|1|Y|G|358, 9B24|1|Y|A|359, 9B24|1|Y|G|360, 9B24|1|Y|U|493, 9B24|1|Y|G|499, 9B24|1|Y|A|500

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B24|1|Y|G|268
9B24|1|Y|C|269
9B24|1|Y|U|270
9B24|1|Y|A|271
9B24|1|Y|A|272
9B24|1|Y|A|273
9B24|1|Y|C|274
9B24|1|Y|C|275
9B24|1|Y|G|276
9B24|1|Y|U|277
9B24|1|Y|A|278
9B24|1|Y|U|279
9B24|1|Y|G|280
9B24|1|Y|C|281
9B24|1|Y|A|282
9B24|1|Y|U|283
9B24|1|Y|G|284
9B24|1|Y|U|285
9B24|1|Y|G|286
9B24|1|Y|A|287
9B24|1|Y|U|288
9B24|1|Y|A|289
9B24|1|Y|C|290
9B24|1|Y|C|291
9B24|1|Y|G|292
9B24|1|Y|G|293
9B24|1|Y|G|294
9B24|1|Y|U|295
9B24|1|Y|A|296
9B24|1|Y|G|297
9B24|1|Y|G|298
9B24|1|Y|G|299
9B24|1|Y|G|300
9B24|1|Y|U|301
9B24|1|Y|U|302
9B24|1|Y|G|303
9B24|1|Y|U|304
9B24|1|Y|G|305
9B24|1|Y|U|306
9B24|1|Y|G|307
9B24|1|Y|U|308
9B24|1|Y|G|309
9B24|1|Y|C|310
9B24|1|Y|G|311
9B24|1|Y|G|312
9B24|1|Y|G|313
9B24|1|Y|G|314
9B24|1|Y|U|315
9B24|1|Y|U|316
9B24|1|Y|G|317
9B24|1|Y|U|318
9B24|1|Y|G|319
9B24|1|Y|G|320
9B24|1|Y|G|321
9B24|1|Y|A|322
9B24|1|Y|C|323
9B24|1|Y|C|324
9B24|1|Y|U|325
9B24|1|Y|A|326
9B24|1|Y|U|327
9B24|1|Y|C|328
9B24|1|Y|U|329
9B24|1|Y|U|330
9B24|1|Y|U|331
*
9B24|1|Y|A|350
9B24|1|Y|G|351
9B24|1|Y|G|352
9B24|1|Y|G|353
9B24|1|Y|C|354
9B24|1|Y|A|355
9B24|1|Y|G|356
9B24|1|Y|U|357
9B24|1|Y|G|358
9B24|1|Y|A|359
9B24|1|Y|G|360
9B24|1|Y|A|361
9B24|1|Y|A|362
9B24|1|Y|A|363
9B24|1|Y|A|364
9B24|1|Y|U|365
9B24|1|Y|G|366
9B24|1|Y|U|367
9B24|1|Y|U|368
9B24|1|Y|G|369
*
9B24|1|Y|C|433
9B24|1|Y|G|434
9B24|1|Y|A|435
9B24|1|Y|C|436
9B24|1|Y|G|437
9B24|1|Y|U|438
9B24|1|Y|C|439
9B24|1|Y|U|440
9B24|1|Y|G|441
9B24|1|Y|U|442
9B24|1|Y|C|443
9B24|1|Y|U|444
9B24|1|Y|U|445
9B24|1|Y|G|446
9B24|1|Y|A|447
9B24|1|Y|U|448
9B24|1|Y|G|449
9B24|1|Y|G|450
9B24|1|Y|U|451
9B24|1|Y|G|452
9B24|1|Y|U|453
9B24|1|Y|U|454
9B24|1|Y|C|455
9B24|1|Y|C|456
9B24|1|Y|C|457
9B24|1|Y|G|458
9B24|1|Y|A|459
9B24|1|Y|G|460
9B24|1|Y|U|461
9B24|1|Y|A|462
9B24|1|Y|G|463
*
9B24|1|Y|U|487
9B24|1|Y|G|488
9B24|1|Y|A|489
9B24|1|Y|A|490
9B24|1|Y|U|491
9B24|1|Y|C|492
9B24|1|Y|U|493
9B24|1|Y|G|494
9B24|1|Y|C|495
9B24|1|Y|C|496
9B24|1|Y|G|497
9B24|1|Y|G|498
9B24|1|Y|G|499
9B24|1|Y|A|500
9B24|1|Y|C|501
9B24|1|Y|C|502
9B24|1|Y|A|503
9B24|1|Y|C|504
9B24|1|Y|C|505
9B24|1|Y|C|506
9B24|1|Y|G|507
9B24|1|Y|G|508
9B24|1|Y|U|509
9B24|1|Y|A|510
9B24|1|Y|A|511
9B24|1|Y|G|512
9B24|1|Y|C|513
9B24|1|Y|C|514

Current chains

Chain Y

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein uL15

Chain t

Large ribosomal subunit protein bL28