J4_9B24_005
3D structure
- PDB id
- 9B24 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT strain gidB mutant mycobacterial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- GGAAA*UGCC*GAC*GGUAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9B24_005 not in the Motif Atlas
- Homologous match to J4_4WF9_002
- Geometric discrepancy: 0.2558
- The information below is about J4_4WF9_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_16174.1
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
9B24|1|Y|G|378
9B24|1|Y|G|379
9B24|1|Y|A|380
9B24|1|Y|A|381
9B24|1|Y|A|382
*
9B24|1|Y|U|398
9B24|1|Y|G|399
9B24|1|Y|C|400
9B24|1|Y|C|401
*
9B24|1|Y|G|405
9B24|1|Y|A|406
9B24|1|Y|C|407
*
9B24|1|Y|G|419
9B24|1|Y|G|420
9B24|1|Y|U|421
9B24|1|Y|A|422
9B24|1|Y|C|423
Current chains
- Chain Y
- 23S rRNA
Nearby chains
- Chain b
- Large ribosomal subunit protein uL4
- Chain q
- Large ribosomal subunit protein uL24
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