J4_9B4Z_002

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9B4Z|1|AA|C|183, 9B4Z|1|AA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B4Z|1|AA|G|142
9B4Z|1|AA|A|143
9B4Z|1|AA|G|144
*
9B4Z|1|AA|C|178
9B4Z|1|AA|A|179
9B4Z|1|AA|U|180
9B4Z|1|AA|A|181
9B4Z|1|AA|A|182
9B4Z|1|AA|C|183
9B4Z|1|AA|G|184
*
9B4Z|1|AA|C|193
9B4Z|1|AA|C|194
9B4Z|1|AA|A|195
9B4Z|1|AA|A|196
9B4Z|1|AA|A|197
9B4Z|1|AA|G|198
*
9B4Z|1|AA|U|219
9B4Z|1|AA|G|220
9B4Z|1|AA|C|221

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20