J4_9B4Z_007

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9B4Z|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B4Z|1|BA|C|268
9B4Z|1|BA|C|269
*
9B4Z|1|BA|G|370
9B4Z|1|BA|A|371
9B4Z|1|BA|G|372
9B4Z|1|BA|U|373
9B4Z|1|BA|A|374
9B4Z|1|BA|G|375
*
9B4Z|1|BA|U|399
9B4Z|1|BA|G|400
9B4Z|1|BA|A|401
9B4Z|1|BA|A|402
9B4Z|1|BA|U|403
9B4Z|1|BA|A|404
9B4Z|1|BA|U|405
9B4Z|1|BA|G|406
*
9B4Z|1|BA|C|421
9B4Z|1|BA|A|422
9B4Z|1|BA|A|423
9B4Z|1|BA|G|424

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain BX

50S ribosomal protein L28