J4_9B50_001

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9B50|1|AA|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9B50_001 not in the Motif Atlas

Homologous match to J4_8B0X_001

Geometric discrepancy: 0.2693

The information below is about J4_8B0X_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9B50|1|AA|G|115
9B50|1|AA|A|116
9B50|1|AA|G|117
9B50|1|AA|U|118
9B50|1|AA|A|119
9B50|1|AA|A|120
9B50|1|AA|U|121
9B50|1|AA|G|122
*
9B50|1|AA|U|239
9B50|1|AA|G|240
*
9B50|1|AA|C|286
9B50|1|AA|U|287
9B50|1|AA|A|288
9B50|1|AA|G|289
*
9B50|1|AA|C|311
9B50|1|AA|C|312

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AQ

30S ribosomal protein S17