3D structure

PDB id
9B50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
9B50|1|AA|C|576, 9B50|1|AA|A|815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9B50|1|AA|G|575
9B50|1|AA|C|576
9B50|1|AA|G|577
*
9B50|1|AA|C|764
9B50|1|AA|G|765
9B50|1|AA|A|766
9B50|1|AA|A|767
9B50|1|AA|A|768
9B50|1|AA|G|769
*
9B50|1|AA|C|810
9B50|1|AA|C|811
9B50|1|AA|G|812
9B50|1|AA|U|813
9B50|1|AA|A|814
9B50|1|AA|A|815
9B50|1|AA|A|816
9B50|1|AA|C|817
9B50|1|AA|G|818
9B50|1|AA|A|819
9B50|1|AA|U|820
9B50|1|AA|G|821
*
9B50|1|AA|C|879
9B50|1|AA|C|880

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AH
30S ribosomal protein S8
Chain AL
30S ribosomal protein S12
Chain AO
30S ribosomal protein S15
Chain AQ
30S ribosomal protein S17
Chain AU
30S ribosomal protein S21
Chain BA
23S ribosomal RNA

Coloring options:

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