J4_9B50_004
3D structure
- PDB id
- 9B50 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CC*GAGUAG*UGAAUAUG*CAAG
- Length
- 20 nucleotides
- Bulged bases
- 9B50|1|BA|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9B50_004 not in the Motif Atlas
- Homologous match to J4_8B0X_004
- Geometric discrepancy: 0.1035
- The information below is about J4_8B0X_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.3
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
9B50|1|BA|C|268
9B50|1|BA|C|269
*
9B50|1|BA|G|370
9B50|1|BA|A|371
9B50|1|BA|G|372
9B50|1|BA|U|373
9B50|1|BA|A|374
9B50|1|BA|G|375
*
9B50|1|BA|U|399
9B50|1|BA|G|400
9B50|1|BA|A|401
9B50|1|BA|A|402
9B50|1|BA|U|403
9B50|1|BA|A|404
9B50|1|BA|U|405
9B50|1|BA|G|406
*
9B50|1|BA|C|421
9B50|1|BA|A|422
9B50|1|BA|A|423
9B50|1|BA|G|424
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BH
- 50S ribosomal protein L9
- Chain BX
- 50S ribosomal protein L28
Coloring options: