J4_9BDL_006

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

9BDL|1|A28S|A|2366, 9BDL|1|A28S|U|2369, 9BDL|1|A28S|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDL|1|A28S|C|2365
9BDL|1|A28S|A|2366
9BDL|1|A28S|A|2367
9BDL|1|A28S|A|2368
9BDL|1|A28S|U|2369
9BDL|1|A28S|A|2370
9BDL|1|A28S|U|2371
*
9BDL|1|A28S|A|2389
9BDL|1|A28S|G|2390
9BDL|1|A28S|G|2391
*
9BDL|1|A28S|C|2824
9BDL|1|A28S|A|2825
9BDL|1|A28S|U|2826
9BDL|1|A28S|G|2827
9BDL|1|A28S|U|2828
9BDL|1|A28S|U|2829
*
9BDL|1|A28S|A|3856
9BDL|1|A28S|G|3857

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL17

60S ribosomal protein L17

Chain AL19

60S ribosomal protein L19

Chain AL31

60S ribosomal protein L31