J4_9BDN_005

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

9BDN|1|A28S|A|2366, 9BDN|1|A28S|U|2369, 9BDN|1|A28S|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDN|1|A28S|C|2365
9BDN|1|A28S|A|2366
9BDN|1|A28S|A|2367
9BDN|1|A28S|A|2368
9BDN|1|A28S|U|2369
9BDN|1|A28S|A|2370
9BDN|1|A28S|U|2371
*
9BDN|1|A28S|A|2389
9BDN|1|A28S|G|2390
9BDN|1|A28S|G|2391
*
9BDN|1|A28S|C|2824
9BDN|1|A28S|A|2825
9BDN|1|A28S|U|2826
9BDN|1|A28S|G|2827
9BDN|1|A28S|U|2828
9BDN|1|A28S|U|2829
*
9BDN|1|A28S|A|3856
9BDN|1|A28S|G|3857

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL17

60S ribosomal protein L17

Chain AL19

60S ribosomal protein L19

Chain AL31

60S ribosomal protein L31