J4_9BDN_006
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 9BDN|1|A28S|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9BDN_006 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.0792
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BDN|1|A28S|G|2406
9BDN|1|A28S|G|2407
9BDN|1|A28S|U|2408
9BDN|1|A28S|U|2409
9BDN|1|A28S|C|2410
*
9BDN|1|A28S|G|2434
9BDN|1|A28S|G|2435
9BDN|1|A28S|U|2436
9BDN|1|A28S|C|2437
9BDN|1|A28S|A|2438
9BDN|1|A28S|G|2439
*
9BDN|1|A28S|U|2538
9BDN|1|A28S|C|2539
*
9BDN|1|A28S|G|2777
9BDN|1|A28S|G|2778
9BDN|1|A28S|C|2779
9BDN|1|A28S|C|2780
9BDN|1|A28S|G|2781
9BDN|1|A28S|U|2782
9BDN|1|A28S|A|2783
9BDN|1|A28S|C|2784
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain A58S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AL19
- 60S ribosomal protein L19
- Chain AL25
- Large ribosomal subunit protein uL23
- Chain AL34
- 60S ribosomal protein L34
- Chain AL35
- 60S ribosomal protein L35
- Chain AL37
- 60S ribosomal protein L37
- Chain AL38
- Large ribosomal subunit protein eL38
- Chain AL39
- 60S ribosomal protein L39
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