3D structure

PDB id
9BDN (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with angiogenin and tRNAAla
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGUUC*GGUCAG*UC*GGCCGUAC
Length
21 nucleotides
Bulged bases
9BDN|1|A28S|C|2437
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9BDN_006 not in the Motif Atlas
Homologous match to J4_8C3A_004
Geometric discrepancy: 0.0792
The information below is about J4_8C3A_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9BDN|1|A28S|G|2406
9BDN|1|A28S|G|2407
9BDN|1|A28S|U|2408
9BDN|1|A28S|U|2409
9BDN|1|A28S|C|2410
*
9BDN|1|A28S|G|2434
9BDN|1|A28S|G|2435
9BDN|1|A28S|U|2436
9BDN|1|A28S|C|2437
9BDN|1|A28S|A|2438
9BDN|1|A28S|G|2439
*
9BDN|1|A28S|U|2538
9BDN|1|A28S|C|2539
*
9BDN|1|A28S|G|2777
9BDN|1|A28S|G|2778
9BDN|1|A28S|C|2779
9BDN|1|A28S|C|2780
9BDN|1|A28S|G|2781
9BDN|1|A28S|U|2782
9BDN|1|A28S|A|2783
9BDN|1|A28S|C|2784

Current chains

Chain A28S
28S rRNA

Nearby chains

Chain A58S
5.8S ribosomal RNA; 5.8S rRNA
Chain AL19
60S ribosomal protein L19
Chain AL25
Large ribosomal subunit protein uL23
Chain AL34
60S ribosomal protein L34
Chain AL35
60S ribosomal protein L35
Chain AL37
60S ribosomal protein L37
Chain AL38
Large ribosomal subunit protein eL38
Chain AL39
60S ribosomal protein L39

Coloring options:


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