J4_9BDN_012

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAA*UC*GUG*CGCC

Length

13 nucleotides

Bulged bases

9BDN|1|A28S|U|4677

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDN|1|A28S|G|4587
9BDN|1|A28S|U|4588
9BDN|1|A28S|A|4589
9BDN|1|A28S|A|4590
*
9BDN|1|A28S|U|4620
9BDN|1|A28S|C|4621
*
9BDN|1|A28S|G|4676
9BDN|1|A28S|U|4677
9BDN|1|A28S|G|4678
*
9BDN|1|A28S|C|4712
9BDN|1|A28S|G|4713
9BDN|1|A28S|C|4714
9BDN|1|A28S|C|4715

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL16

Large ribosomal subunit protein uL13

Chain AL23

60S ribosomal protein L23