J4_9BDP_014
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUGUGG*CGC*GAGGUCU*ACUC
- Length
- 20 nucleotides
- Bulged bases
- 9BDP|1|TIRN|U|8, 9BDP|1|TIRN|U|47, 9BDP|1|TIRN|C|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9BDP_014 not in the Motif Atlas
- Homologous match to J4_6GSK_031
- Geometric discrepancy: 0.3782
- The information below is about J4_6GSK_031
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_13620.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cHS-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
9BDP|1|TIRN|G|5
9BDP|1|TIRN|U|6
9BDP|1|TIRN|G|7
9BDP|1|TIRN|U|8
9BDP|1|TIRN|G|9
9BDP|1|TIRN|G|10
*
9BDP|1|TIRN|C|25
9BDP|1|TIRN|G|26
9BDP|1|TIRN|C|27
*
9BDP|1|TIRN|G|43
9BDP|1|TIRN|A|44
9BDP|1|TIRN|G|45
9BDP|1|TIRN|G|46
9BDP|1|TIRN|U|47
9BDP|1|TIRN|C|48
9BDP|1|TIRN|U|49
*
9BDP|1|TIRN|A|65
9BDP|1|TIRN|C|66
9BDP|1|TIRN|U|67
9BDP|1|TIRN|C|68
Current chains
- Chain TIRN
- tRNAAla
Nearby chains
- Chain A28S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL12
- uL11
- Chain AS23
- 40S ribosomal protein S23
- Chain EF1A
- Elongation factor 1-alpha
Coloring options: