J4_9BH5_002

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CGAAG*CCAUAAACC*GAG*CGUUCUG

Length

24 nucleotides

Bulged bases

9BH5|1|A5|U|239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BH5|1|A5|C|188
9BH5|1|A5|G|189
9BH5|1|A5|A|190
9BH5|1|A5|A|191
9BH5|1|A5|G|192
*
9BH5|1|A5|C|208
9BH5|1|A5|C|209
9BH5|1|A5|A|210
9BH5|1|A5|U|211
9BH5|1|A5|A|212
9BH5|1|A5|A|213
9BH5|1|A5|A|214
9BH5|1|A5|C|215
9BH5|1|A5|C|216
*
9BH5|1|A5|G|220
9BH5|1|A5|A|221
9BH5|1|A5|G|222
*
9BH5|1|A5|C|234
9BH5|1|A5|G|235
9BH5|1|A5|U|236
9BH5|1|A5|U|237
9BH5|1|A5|C|238
9BH5|1|A5|U|239
9BH5|1|A5|G|240

Current chains

Chain A5

28S rRNA

Nearby chains

Chain A8

5.8S ribosomal RNA; 5.8S rRNA

Chain CC

Large ribosomal subunit protein uL4

Chain CY

Large ribosomal subunit protein uL24