J4_9BH5_007
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9BH5|1|A5|U|2417
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9BH5_007 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.0663
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BH5|1|A5|C|2295
9BH5|1|A5|U|2296
9BH5|1|A5|G|2297
*
9BH5|1|A5|C|2351
9BH5|1|A5|G|2352
*
9BH5|1|A5|C|2370
9BH5|1|A5|U|2371
9BH5|1|A5|U|2372
9BH5|1|A5|A|2373
9BH5|1|A5|A|2374
9BH5|1|A5|G|2375
9BH5|1|A5|G|2376
9BH5|1|A5|U|2377
9BH5|1|A5|A|2378
9BH5|1|A5|G|2379
*
9BH5|1|A5|U|2413
9BH5|1|A5|G|2414
9BH5|1|A5|A|2415
9BH5|1|A5|A|2416
9BH5|1|A5|U|2417
9BH5|1|A5|G|2418
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain B2
- Small subunit ribosomal RNA; SSU rRNA
- Chain CA
- Large ribosomal subunit protein uL2
- Chain Cn
- eL41
- Chain DA
- Transfer RNA; tRNA
Coloring options: