J4_9BH5_008

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CUAAG*UUG*CC*GUG

Length

13 nucleotides

Bulged bases

9BH5|1|A5|A|2769, 9BH5|1|A5|U|2864

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BH5|1|A5|C|2766
9BH5|1|A5|U|2767
9BH5|1|A5|A|2768
9BH5|1|A5|A|2769
9BH5|1|A5|G|2770
*
9BH5|1|A5|U|2824
9BH5|1|A5|U|2825
9BH5|1|A5|G|2826
*
9BH5|1|A5|C|2853
9BH5|1|A5|C|2854
*
9BH5|1|A5|G|2863
9BH5|1|A5|U|2864
9BH5|1|A5|G|2865

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CD

Large ribosomal subunit protein uL18

Chain CT

Large ribosomal subunit protein eL21

Chain Co

Large ribosomal subunit protein eL42