J4_9BH5_009
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 9BH5|1|A5|A|2769
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9BH5_009 not in the Motif Atlas
- Homologous match to J4_8C3A_008
- Geometric discrepancy: 0.1085
- The information below is about J4_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BH5|1|A5|C|2766
9BH5|1|A5|U|2767
9BH5|1|A5|A|2768
9BH5|1|A5|A|2769
9BH5|1|A5|G|2770
*
9BH5|1|A5|U|2824
9BH5|1|A5|U|2825
9BH5|1|A5|G|2826
9BH5|1|A5|A|2827
9BH5|1|A5|U|2828
*
9BH5|1|A5|A|2852
9BH5|1|A5|C|2853
9BH5|1|A5|C|2854
*
9BH5|1|A5|G|2863
9BH5|1|A5|U|2864
9BH5|1|A5|G|2865
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain CD
- Large ribosomal subunit protein uL18
- Chain CT
- Large ribosomal subunit protein eL21
- Chain Cb
- 60S ribosomal protein L29
- Chain Co
- Large ribosomal subunit protein eL42
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