J4_9BH5_010

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUAA*UC*GAG*CGCC

Length

13 nucleotides

Bulged bases

9BH5|1|A5|A|3212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BH5|1|A5|G|3122
9BH5|1|A5|U|3123
9BH5|1|A5|A|3124
9BH5|1|A5|A|3125
*
9BH5|1|A5|U|3155
9BH5|1|A5|C|3156
*
9BH5|1|A5|G|3211
9BH5|1|A5|A|3212
9BH5|1|A5|G|3213
*
9BH5|1|A5|C|3247
9BH5|1|A5|G|3248
9BH5|1|A5|C|3249
9BH5|1|A5|C|3250

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CB

Large ribosomal subunit protein uL3

Chain CO

Large ribosomal subunit protein uL13

Chain CV

Large ribosomal subunit protein uL14